Analyses of regulation of respiration by bacterial signals

科学研究費助成事業(科学研究費補助金)研究成果報告書：基盤研究(B)2009-2011課題番号：2138005

Surface Bound States in n-band Systems with Quasiclassical Approach

We discuss the tunneling spectroscopy at a surface in multi-band systems such as Fe-based superconductors with the use of the quasiclassical approach. We extend the single-band method by Matsumoto and Shiba [J. Phys. Soc. Jpn. 64, 1703 (1995)] into $n$-band systems ($n \geq 2$). We show that the appearance condition of the zero-bias conductance peak does not depend on details of the pair-potential anisotropy, but it depends on details of the normal state properties in the case of fully-gapped superconductors. The surface density of states in a two-band superconductor is presented as a simplest application. The quasiclassical approach enables us to calculate readily the surface-angular dependence of the tunneling spectroscopy.Comment: 9 pages, 7 figures; References and Discussions update

Social Behaviours under Anaerobic Conditions in Pseudomonas aeruginosa

Pseudomonas aeruginosa is well adapted to grow in anaerobic environments in the presence of nitrogen oxides by generating energy through denitrification. Environmental cues, such as oxygen and nitrogen oxide concentrations, are important in regulating the gene expression involved in this process. Recent data indicate that P. aeruginosa also employs cell-to-cell communication signals to control the denitrifying activity. The regulation of denitrification by these signalling molecules may control nitric oxide production. Nitric oxide, in turn, functions as a signalling molecule by activating certain regulatory proteins. Moreover, under denitrifying conditions, drastic changes in cell physiology and cell morphology are induced that significantly impact group behaviours, such as biofilm formation

Involvement of cathepsins in the invasion, metastasis and proliferation of cancer cells

Tumor cell invasion and metastasis are associated with the proteolytic activity of various types of proteinases. Among them, cathepsins, which are lysosomal proteinases, have received more attention recently. Since elevated expressions of cathepsins and diminished levels of their inhibitors have been observed in several human cancers, including breast, gastric and prostate cancer, especially in aggressive cancer cells, cathepsins have been suggested to be biological markers of malignant tumors and have proved useful for prognosis of the disease. Furthermore, cathepsins have various roles in cancer progression. Cathepsin D has a mitogenic activity independent of its proteolytic activity and it attenuates the anti-tumor immune response of decaying chemokines to inhibit the function of dendritic cells. Cathepsins B and L have been shown to play an important role in matrix degradation and cell invasion. The administration of their inhibitors prevents the invasion and metastasis of cancer cells. These results indicate that cancer cells orchestrate various cathepsins to progress malignant diseases. Cathepsins may be a potential target for cancer therapy

Are bacterial outer membrane vesicles carriers for bacterial signals among different species

科学研究費助成事業(学術研究助成基金助成金)研究成果報告書：挑戦的萌芽研究2011-2012課題番号：2365806

微生物シグナルを利用した微生物集団制御技術の科学的基盤確立に関する研究

科学研究費助成事業 研究成果報告書：基盤研究(A)2013-2017課題番号 : 2524102

LIPUS effect on lateral tooth movement

Introduction: Because mechanical stimulation of the periodontal ligament (PDL) by low-intensity pulsed ultrasound (LIPUS) has been shown to increase the speed of bone remodeling, the aim of this study was to examine the effects of LIPUS stimulation on the rate of tooth movement and bone remodeling during lateral tooth movement. Methods: Twelve-week-old Wistar rats were divided into two groups. The LIPUS group received experimental tooth movement with LIPUS stimulation, and the tooth movement (TM) group had experimental tooth movement without LIPUS. For the LIPUS and TM groups, the upper right first molars were moved labially with fixed appliances. LIPUS exposure was placed in the region corresponding to the right maxillary first molar. Three days after tooth movement, tartrate-resistant acid phosphatase (TRAP) was examined. Fourteen days after tooth movement, the intermolar width, bone mineral content (BMC), and bone volume fraction (BV/TV) were examined by micro computed tomography (micro-CT), and newly formed bone was measured histomorphometrically. Results: The number of TRAP-positive cells at the compressed region was obviously greater in the LIPUS group. The intermolar width was significantly greater in the LIPUS group than in the TM group. The alveolar bone around the maxillary first molar showed no differences in BMC or BV/TV between the LIPUS and TM groups. The LIPUS group exhibited a significantly greater amount of newly formed alveolar bone than the TM group. Conclusions: The present study provides evidence of the beneficial effects of LIPUS on the lateral tooth movement

Fine structure of OPCs observed by SBF-SEM

Oligodendrocyte precursor cells (OPC) arise from restricted regions of the central nervous system (CNS) and differentiate into myelin-forming cells after migration, but their ultrastructural characteristics have not been fully elucidated. This study examined the three-dimensional ultrastructure of OPCs in comparison with other glial cells in the early postnatal optic nerve by serial block-face scanning electron microscopy. We examined 70 putative OPCs (pOPC) that were distinct from other glial cells according to established morphological criteria. The pOPCs were unipolar in shape with relatively few processes, and their Golgi apparatus were localized in the perinuclear region with a single cisterna. Astrocytes abundant in the optic nerve were distinct from pOPCs and had a greater number of processes and more complicated Golgi apparatus morphology. All pOPCs and astrocytes contained a pair of centrioles (basal bodies). Among them, 45% of pOPCs extended a short cilium, and 20% of pOPCs had centrioles accompanied by vesicles, whereas all astrocytes with basal bodies had cilia with invaginated ciliary pockets. These results suggest that the fine structures of pOPCs during the developing and immature stages may account for their distinct behavior. Additionally, the vesicular transport of the centrioles, along with a short cilium length, suggests active ciliogenesis in pOPCs

Intra- and Interspecies Variability of Single-Cell Innate Fluorescence Signature of Microbial Cell

Here we analyzed the innate fluorescence signature of the single microbial cell, within both clonal and mixed populations of microorganisms. We found that even very similarly shaped cells differ noticeably in their autofluorescence features and that the innate fluorescence signatures change dynamically with growth phases. We demonstrated that machine learning models can be trained with a data set of single-cell innate fluorescence signatures to annotate cells according to their phenotypes and physiological status, for example, distinguishing a wild-type Aspergillus nidulans cell from its nitrogen metabolism mutant counterpart and log-phase cells from stationary-phase cells of Pseudomonas putida We developed a minimally invasive method (confocal reflection microscopy-assisted single-cell innate fluorescence [CRIF] analysis) to optically extract and catalog the innate cellular fluorescence signatures of each of the individual live microbial cells in a three-dimensional space. This technique represents a step forward from traditional techniques which analyze the innate fluorescence signatures at the population level and necessitate a clonal culture. Since the fluorescence signature is an innate property of a cell, our technique allows the prediction of the types or physiological status of intact and tag-free single cells, within a cell population distributed in a three-dimensional space. Our study presents a blueprint for a streamlined cell analysis where one can directly assess the potential phenotype of each single cell in a heterogenous population by its autofluorescence signature under a microscope, without cell tagging.IMPORTANCE A cell\u27s innate fluorescence signature is an assemblage of fluorescence signals emitted by diverse biomolecules within a cell. It is known that the innate fluoresce signature reflects various cellular properties and physiological statuses; thus, they can serve as a rich source of information in cell characterization as well as cell identification. However, conventional techniques focus on the analysis of the innate fluorescence signatures at the population level but not at the single-cell level and thus necessitate a clonal culture. In the present study, we developed a technique to analyze the innate fluorescence signature of a single microbial cell. Using this novel method, we found that even very similarly shaped cells differ noticeably in their autofluorescence features, and the innate fluorescence signature changes dynamically with growth phases. We also demonstrated that the different cell types can be classified accurately within a mixed population under a microscope at the resolution of a single cell, depending solely on the innate fluorescence signature information. We suggest that single-cell autofluoresce signature analysis is a promising tool to directly assess the taxonomic or physiological heterogeneity within a microbial population, without cell tagging